Model ID
Reactions
Metabolites
Genes
| Metric | Value | Visualization |
|---|---|---|
| Reaction with kcat information | 2023 (74.6%) |
|
| Reactions with EC information | 1096 (40.4%) |
|
| Total kcat in output | 6071 | - |
During the extraction process, several issues may arise that can impact the
quality of the retrieved kcat data.
When an EC number is incomplete or has been transferred, WILDkCAT performs the
retrieval based only on the available enzyme information. Such cases are indicated as
'incomplete' or 'transferred' in the 'warning_ec' column.
These situations reduce the likelihood of finding alternative kcat values.
Additionally, WILDkCAT attempts to identify the catalytic enzyme associated with
each reaction. If no Gene–Protein–Reaction rule is available, or if the catalytic
enzyme cannot be found via the UniProt API, the entry is labeled as
'none' in the 'warning_enz' column.
If both the EC number and the catalytic enzyme information are missing for a given
reaction, the corresponding row is removed due to insufficient information to assign
a kcat value.
| Cases | Count |
|---|---|
| Transferred EC codes | 89 |
| Incomplete EC codes | 52 |
| Number of reactions without catalytic enzyme | 916 |
| Number of reactions dropped due to inconsistent or absent EC codes and enzymes | 689 |
| Number of kcat values dropped due to inconsistent or absent EC codes and enzymes | 937 |