Package idare.Properties

Class IDAREProperties

java.lang.Object

idare.Properties.IDAREProperties

public class IDAREProperties
extends Object

Class containing all static Fields for the IDARE Columns. Please use only these fields when altering IDARE columns.

Author:

Thomas PFau

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	IDAREProperties.EdgeType
static class	IDAREProperties.NodeType

Field Summary

Fields

Modifier and Type	Field	Description
static String	IDARE_DISPLAYMANAGERINFO_SESSION_ID
static String	IDARE_DUPLICATED_NODE
static String	IDARE_EDGE_PROPERTY	IDARE Column Headers
static String	IDARE_GENE_EDGE_ID
static String	IDARE_IMAGE_SESSION_ID	The Field ID of IDARE information in stored sessions.
static String	IDARE_LINK_TARGET	This field should only be set if the corresponding node is a Link Node (i.e.
static String	IDARE_LINK_TARGET_SUBSYSTEM	This is an awkward way to restore the correct linking behaviour since there is otherwise no way to know which SubsystemView a link targeted.
static String	IDARE_NETWORK_ID
static String	IDARE_NODE_NAME
static String	IDARE_NODE_TYPE
static String	IDARE_NODE_UID	The ID for this node if it is the target of a link.
static String	IDARE_ORIGINAL_NODE
static String	IDARE_SUBNETWORK_TYPE
static String	SBML_EDGE_TYPE
static String	SBML_GENE_STRING	Some specifications for SBML data fields
static String	SBML_ID_STRING
static String	SBML_NAME_STRING
static String	SBML_REACTION_STRING
static String	SBML_SPECIES_STRING
static String	SBML_TYPE_STRING
static Map<String,String>	SBMLToIDARE
static String	SUBSYSTEMS_SAVE_FILE	IDARE SubSystems Save File
static String	SUBSYSTEMS_SAVE_ID

Constructor Summary

Constructors

Constructor	Description
IDAREProperties()

Method Summary

Modifier and Type	Method	Description
String	getType(String name)
void	setType(String IDAREId, String name)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

IDARE_EDGE_PROPERTY

public static final String IDARE_EDGE_PROPERTY

IDARE Column Headers

See Also:

Constant Field Values

IDARE_NODE_TYPE

public static final String IDARE_NODE_TYPE

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Constant Field Values

IDARE_SUBNETWORK_TYPE

public static final String IDARE_SUBNETWORK_TYPE

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Constant Field Values

IDARE_NODE_NAME

public static final String IDARE_NODE_NAME

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Constant Field Values

IDARE_NETWORK_ID

public static final String IDARE_NETWORK_ID

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Constant Field Values

IDARE_GENE_EDGE_ID

public static final String IDARE_GENE_EDGE_ID

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Constant Field Values

IDARE_DUPLICATED_NODE

public static final String IDARE_DUPLICATED_NODE

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Constant Field Values

IDARE_ORIGINAL_NODE

public static final String IDARE_ORIGINAL_NODE

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Constant Field Values

IDARE_LINK_TARGET

public static final String IDARE_LINK_TARGET

This field should only be set if the corresponding node is a Link Node (i.e. the IDARENodeType is IDARE_LINK)

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Constant Field Values

IDARE_NODE_UID

public static final String IDARE_NODE_UID

The ID for this node if it is the target of a link. At network creation this will be set to the SUID of the corresponding node. It should never ever be overwritten Link Nodes should (in general) not have this property set.

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Constant Field Values

IDARE_LINK_TARGET_SUBSYSTEM

public static final String IDARE_LINK_TARGET_SUBSYSTEM

This is an awkward way to restore the correct linking behaviour since there is otherwise no way to know which SubsystemView a link targeted.

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Constant Field Values

SBML_EDGE_TYPE

public static final String SBML_EDGE_TYPE

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Constant Field Values

SUBSYSTEMS_SAVE_FILE

public static final String SUBSYSTEMS_SAVE_FILE

IDARE SubSystems Save File

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Constant Field Values

SUBSYSTEMS_SAVE_ID

public static final String SUBSYSTEMS_SAVE_ID

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Constant Field Values

IDARE_IMAGE_SESSION_ID

public static final String IDARE_IMAGE_SESSION_ID

The Field ID of IDARE information in stored sessions.

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Constant Field Values

IDARE_DISPLAYMANAGERINFO_SESSION_ID

public static final String IDARE_DISPLAYMANAGERINFO_SESSION_ID

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Constant Field Values

SBML_GENE_STRING

public static final String SBML_GENE_STRING

Some specifications for SBML data fields

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Constant Field Values

SBML_TYPE_STRING

public static final String SBML_TYPE_STRING

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Constant Field Values

SBML_ID_STRING

public static final String SBML_ID_STRING

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Constant Field Values

SBML_SPECIES_STRING

public static final String SBML_SPECIES_STRING

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Constant Field Values

SBML_REACTION_STRING

public static final String SBML_REACTION_STRING

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Constant Field Values

SBML_NAME_STRING

public static final String SBML_NAME_STRING

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Constant Field Values

SBMLToIDARE

public static final Map<String,String> SBMLToIDARE

Constructor Detail

IDAREProperties

public IDAREProperties()

Method Detail

getType

public String getType(String name)

setType

public void setType(String IDAREId,
                    String name)