Package idare.ThirdParty

Class CytoscapeUtils

java.lang.Object

idare.ThirdParty.CytoscapeUtils

public class CytoscapeUtils
extends Object

Constructor Summary

Constructors

Constructor	Description
CytoscapeUtils()

Method Summary

Modifier and Type	Method	Description
static Set<org.cytoscape.model.CyNode>	getNodesWithValue(org.cytoscape.model.CyNetwork net, org.cytoscape.model.CyTable table, String colname, Object value)	From the APP Developer Cookbook: Get all the nodes with a given attribute value.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CytoscapeUtils

public CytoscapeUtils()

Method Detail

getNodesWithValue

public static Set<org.cytoscape.model.CyNode> getNodesWithValue(org.cytoscape.model.CyNetwork net,
                                                                org.cytoscape.model.CyTable table,
                                                                String colname,
                                                                Object value)

From the APP Developer Cookbook: Get all the nodes with a given attribute value. This method is effectively a wrapper around CyTable.getMatchingRows(java.lang.String, java.lang.Object). It converts the table's primary keys (assuming they are node SUIDs) back to nodes in the network. Here is an example of using this method to find all nodes with a given name: CyNetwork net = ...; String nodeNameToSearchFor = ...; Set<CyNode> nodes = getNodesWithValue(net, net.getDefaultNodeTable(), "name", nodeNameToSearchFor); // nodes now contains all CyNodes with the name specified by nodeNameToSearchFor

Parameters:

net - The network that contains the nodes you are looking for.

table - The node table that has the attribute value you are looking for; the primary keys of this table must be SUIDs of nodes in net.

colname - The name of the column with the attribute value

value - The attribute value

Returns:

A set of CyNodes with a matching value, or an empty set if no nodes match.